STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amuc_2017KEGG: azc:AZC_0866 uncharacterized phage-associated protein. (161 aa)    
Predicted Functional Partners:
Amuc_1367
Prophage antirepressor; PFAM: BRO domain protein; phage antirepressor protein; KEGG: lre:Lreu_0803 prophage antirepressor.
     
 0.529
Amuc_0323
Phage transcriptional regulator, AlpA; PFAM: Prophage CP4-57 regulatory; KEGG: sbn:Sbal195_3111 hypothetical protein.
      
 0.508
Amuc_0551
TIGRFAM: phage SPO1 DNA polymerase-related protein; PFAM: Uracil-DNA glycosylase superfamily; KEGG: mxa:MXAN_4393 uracil-DNA glycosylase, family 4.
      
 0.508
Amuc_1116
TIGRFAM: phage SPO1 DNA polymerase-related protein; PFAM: Uracil-DNA glycosylase superfamily; KEGG: gme:Gmet_2671 phage SPO1 DNA polymerase-related protein.
      
 0.508
Amuc_1335
KEGG: rsp:RSP_3783 putative bacteriophage-related protein, phage portal protein, lambda family.
      
 0.508
Amuc_1348
TIGRFAM: phage tape measure protein; KEGG: tva:TVAG_110290 viral A-type inclusion protein, putative Pfam: XLF HSBP1 Baculo_PEP_C Ribosomal_LX EzrA Syntaxin Syntaxin-6_N TSC22 Rad50_zn_hook Spectrin Laminin_I Prefoldin THOC7 TBPIP Seryl_tRNA_N DUF593 DUF148 TACC PspA_IM30 Rab5-bind M Myosin_tail_1 Troponin Filament Tektin Tup_N Phage_GP20 GBP_C DUF827 MAP65_ASE1 Alpha-2-MRAP_C Fez1 BRE1 Prefoldin_2 FlgM Ribosomal_L30_N Laminin_II Microtub_assoc.
      
 0.508
Amuc_1355
Bacteriophage tail assembly protein-like protein; KEGG: dsy:DSY2184 hypothetical protein.
      
 0.508
Amuc_1711
KEGG: sbn:Sbal195_1965 conserved hypothetical phage related protein.
      
 0.508
Amuc_2010
KEGG: stc:str0657 hypothetical protein.
     
 0.506
cas2
CRISPR-associated protein Cas2; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.
     
 0.505
Your Current Organism:
Akkermansia muciniphila
NCBI taxonomy Id: 349741
Other names: A. muciniphila ATCC BAA-835, Akkermansia muciniphila ATCC BAA-835, Akkermansia muciniphila Muc, Akkermansia muciniphila str. ATCC BAA-835, Akkermansia muciniphila strain ATCC BAA-835, Akkermansia sp. Muc
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