STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hemLTIGRFAM: glutamate-1-semialdehyde-2,1-aminomutase; PFAM: aminotransferase, class I and II; aminotransferase class-III; KEGG: mva:Mvan_0864 glutamate-1-semialdehyde-2,1-aminomutase. (432 aa)    
Predicted Functional Partners:
Mflv_0064
Porphobilinogen synthase; PFAM: delta-aminolevulinic acid dehydratase; KEGG: mva:Mvan_0847 porphobilinogen synthase; Belongs to the ALAD family.
 
 
 0.997
hemA
glutamyl-tRNA reductase; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA).
 
 0.997
Mflv_0053
PFAM: Phosphoglycerate mutase; KEGG: mva:Mvan_0865 phosphoglycerate mutase.
  
    0.973
hemC
Hydroxymethylbilane synthase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. Belongs to the HMBS family.
 
  
 0.953
Mflv_0052
PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: mva:Mvan_0866 redoxin domain protein.
  
  
 0.942
Mflv_0051
PFAM: cytochrome c biogenesis protein, transmembrane region; KEGG: mva:Mvan_0867 cytochrome c biogenesis protein, transmembrane region.
  
  
 0.925
Mflv_0049
PFAM: cytochrome c assembly protein; KEGG: mva:Mvan_0869 cytochrome c assembly protein.
 
  
 0.921
Mflv_0050
PFAM: ResB family protein; KEGG: mva:Mvan_0868 ResB family protein.
  
  
 0.921
hemE
Uroporphyrinogen decarboxylase; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III.
 
  
 0.909
Mflv_3390
PFAM: beta-ketoacyl synthase; acyl transferase domain protein; condensation domain protein; phosphopantetheine-binding; KEGG: mtc:MT3005 polyketide synthase.
    
 0.880
Your Current Organism:
Mycolicibacterium gilvum
NCBI taxonomy Id: 350054
Other names: M. gilvum PYR-GCK, Mycobacterium flavescens ATCC 700033, Mycobacterium flavescens PYR-GCK, Mycobacterium gilvum PYR-GCK, Mycolicibacterium gilvum PYR-GCK
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