STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mvan_0563TIGRFAM: 4-carboxymuconolactone decarboxylase; PFAM: alpha/beta hydrolase fold; Carboxymuconolactone decarboxylase; KEGG: mmc:Mmcs_1701 4-carboxymuconolactone decarboxylase. (393 aa)    
Predicted Functional Partners:
Mvan_0562
3-carboxy-cis,cis-muconate cycloisomerase; PFAM: fumarate lyase; KEGG: mmc:Mmcs_1700 fumarate lyase.
 
 
 0.997
Mvan_0565
KEGG: mmc:Mmcs_1703 3-oxoacid CoA-transferase, subunit B; TIGRFAM: 3-oxoacid CoA-transferase, B subunit; PFAM: coenzyme A transferase.
 
 
 0.984
Mvan_0564
KEGG: mmc:Mmcs_1702 3-oxoacid CoA-transferase, subunit A; TIGRFAM: 3-oxoacid CoA-transferase, A subunit; PFAM: coenzyme A transferase.
 
 
 0.983
Mvan_0560
TIGRFAM: protocatechuate 3,4-dioxygenase, beta subunit; PFAM: intradiol ring-cleavage dioxygenase; KEGG: mmc:Mmcs_1698 protocatechuate 3,4-dioxygenase, beta subunit.
 
  
 0.969
Mvan_0561
TIGRFAM: protocatechuate 3,4-dioxygenase, alpha subunit; PFAM: intradiol ring-cleavage dioxygenase; KEGG: mmc:Mmcs_1699 protocatechuate 3,4-dioxygenase, alpha subunit.
 
  
 0.959
Mvan_3396
PFAM: Carboxymuconolactone decarboxylase; KEGG: mmc:Mmcs_0333 carboxymuconolactone decarboxylase.
 
 
 0.935
Mvan_4402
TIGRFAM: 3-oxoacid CoA-transferase, B subunit; PFAM: coenzyme A transferase; KEGG: mmc:Mmcs_1703 3-oxoacid CoA-transferase, subunit B.
 
 
 0.933
Mvan_4934
PFAM: Carboxymuconolactone decarboxylase; KEGG: sma:SAV6757 4-carboxymuconolactone decarboxylase.
 
 
0.927
Mvan_5154
PFAM: Carboxymuconolactone decarboxylase; KEGG: mpa:MAP0605 hypothetical protein.
 
 
0.926
Mvan_4403
KEGG: mmc:Mmcs_1702 3-oxoacid CoA-transferase, subunit A; TIGRFAM: 3-oxoacid CoA-transferase, A subunit; PFAM: coenzyme A transferase.
  
 
 0.918
Your Current Organism:
Mycolicibacterium vanbaalenii
NCBI taxonomy Id: 350058
Other names: M. vanbaalenii PYR-1, Mycobacterium sp. PYR-1, Mycobacterium vanbaalenii DSM 7251, Mycobacterium vanbaalenii PYR-1, Mycolicibacterium vanbaalenii DSM 7251, Mycolicibacterium vanbaalenii PYR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.