STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mvan_2846PFAM: protein of unknown function DUF167; KEGG: mtc:MT2038 hypothetical protein; Belongs to the UPF0235 family. (75 aa)    
Predicted Functional Partners:
Mvan_3110
PFAM: PE-PPE, C-terminal domain protein; KEGG: mmc:Mmcs_1735 PE-PPE-like protein.
  
     0.574
Mvan_1860
KEGG: mmc:Mmcs_5298 hypothetical protein.
  
     0.560
Mvan_2847
KEGG: mmc:Mmcs_0290 hypothetical protein.
       0.533
Mvan_5374
Transcriptional regulator, TetR family; PFAM: regulatory protein, TetR; PE-PPE, C-terminal domain protein; KEGG: mbo:Mb1465 PE family protein.
  
     0.486
Mvan_4815
PFAM: PE-PPE, C-terminal domain protein; KEGG: mmc:Mmcs_4281 PE-PPE-like protein.
  
     0.485
Mvan_2848
PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: mmc:Mmcs_0292 short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
       0.451
Mvan_5878
PFAM: metallophosphoesterase; KEGG: syn:sll1064 hypothetical protein.
  
     0.418
Your Current Organism:
Mycolicibacterium vanbaalenii
NCBI taxonomy Id: 350058
Other names: M. vanbaalenii PYR-1, Mycobacterium sp. PYR-1, Mycobacterium vanbaalenii DSM 7251, Mycobacterium vanbaalenii PYR-1, Mycolicibacterium vanbaalenii DSM 7251, Mycolicibacterium vanbaalenii PYR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.