node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Mvan_0839 | rplE | Mvan_0839 | Mvan_1334 | PFAM: Protein of unknown function DUF1713; KEGG: cdi:DIP0396 hypothetical protein. | LSU ribosomal protein L5P; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs. | 0.999 |
Mvan_0839 | rplR | Mvan_0839 | Mvan_1338 | PFAM: Protein of unknown function DUF1713; KEGG: cdi:DIP0396 hypothetical protein. | LSU ribosomal protein L18P; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. | 0.999 |
Mvan_0839 | rplT | Mvan_0839 | Mvan_3326 | PFAM: Protein of unknown function DUF1713; KEGG: cdi:DIP0396 hypothetical protein. | LSU ribosomal protein L20P; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.999 |
Mvan_0839 | rplU | Mvan_0839 | Mvan_3946 | PFAM: Protein of unknown function DUF1713; KEGG: cdi:DIP0396 hypothetical protein. | LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.999 |
Mvan_0839 | rpmB | Mvan_0839 | Mvan_2153 | PFAM: Protein of unknown function DUF1713; KEGG: cdi:DIP0396 hypothetical protein. | PFAM: ribosomal protein L28; KEGG: mmc:Mmcs_1934 ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family. | 0.999 |
Mvan_0839 | rpmE | Mvan_0839 | Mvan_4340 | PFAM: Protein of unknown function DUF1713; KEGG: cdi:DIP0396 hypothetical protein. | LSU ribosomal protein L31P; Binds the 23S rRNA. | 0.999 |
Mvan_0839 | rpmG1 | Mvan_0839 | Mvan_1229 | PFAM: Protein of unknown function DUF1713; KEGG: cdi:DIP0396 hypothetical protein. | PFAM: ribosomal protein L33; KEGG: mbo:Mb0653 probable 50S ribosomal protein L33 RpmG2; Belongs to the bacterial ribosomal protein bL33 family. | 0.999 |
Mvan_0839 | rpmJ | Mvan_0839 | Mvan_1432 | PFAM: Protein of unknown function DUF1713; KEGG: cdi:DIP0396 hypothetical protein. | PFAM: ribosomal protein L36; KEGG: mmc:Mmcs_1109 ribosomal protein L36; Belongs to the bacterial ribosomal protein bL36 family. | 0.999 |
Mvan_0839 | rpsF | Mvan_0839 | Mvan_6034 | PFAM: Protein of unknown function DUF1713; KEGG: cdi:DIP0396 hypothetical protein. | SSU ribosomal protein S6P; Binds together with S18 to 16S ribosomal RNA. | 0.999 |
Mvan_0839 | rpsO | Mvan_0839 | Mvan_2349 | PFAM: Protein of unknown function DUF1713; KEGG: cdi:DIP0396 hypothetical protein. | SSU ribosomal protein S15P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA. | 0.999 |
rplE | Mvan_0839 | Mvan_1334 | Mvan_0839 | LSU ribosomal protein L5P; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs. | PFAM: Protein of unknown function DUF1713; KEGG: cdi:DIP0396 hypothetical protein. | 0.999 |
rplE | rplR | Mvan_1334 | Mvan_1338 | LSU ribosomal protein L5P; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs. | LSU ribosomal protein L18P; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. | 0.999 |
rplE | rplT | Mvan_1334 | Mvan_3326 | LSU ribosomal protein L5P; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs. | LSU ribosomal protein L20P; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.997 |
rplE | rplU | Mvan_1334 | Mvan_3946 | LSU ribosomal protein L5P; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs. | LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.993 |
rplE | rpmB | Mvan_1334 | Mvan_2153 | LSU ribosomal protein L5P; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs. | PFAM: ribosomal protein L28; KEGG: mmc:Mmcs_1934 ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family. | 0.991 |
rplE | rpmE | Mvan_1334 | Mvan_4340 | LSU ribosomal protein L5P; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs. | LSU ribosomal protein L31P; Binds the 23S rRNA. | 0.993 |
rplE | rpmG1 | Mvan_1334 | Mvan_1229 | LSU ribosomal protein L5P; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs. | PFAM: ribosomal protein L33; KEGG: mbo:Mb0653 probable 50S ribosomal protein L33 RpmG2; Belongs to the bacterial ribosomal protein bL33 family. | 0.991 |
rplE | rpmJ | Mvan_1334 | Mvan_1432 | LSU ribosomal protein L5P; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs. | PFAM: ribosomal protein L36; KEGG: mmc:Mmcs_1109 ribosomal protein L36; Belongs to the bacterial ribosomal protein bL36 family. | 0.995 |
rplE | rpsF | Mvan_1334 | Mvan_6034 | LSU ribosomal protein L5P; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs. | SSU ribosomal protein S6P; Binds together with S18 to 16S ribosomal RNA. | 0.999 |
rplE | rpsO | Mvan_1334 | Mvan_2349 | LSU ribosomal protein L5P; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs. | SSU ribosomal protein S15P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA. | 0.995 |