STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
paaJacetyl-CoA C-acetyltransferase (thiolase I). (393 aa)    
Predicted Functional Partners:
RCIX149
Conserved hypothetical protein; Belongs to the thiolase-like superfamily. UPF0219 family.
 
 0.999
RCIX152
Conserved hypothetical protein.
 
 
 0.999
acs-1
acetyl-CoA synthetase (AMP-forming).
  
 
 0.958
acs-2
Putative acetyl-CoA synthetase (AMP-forming).
  
 
 0.958
leuA-4
2-isopropylmalate synthase; Belongs to the alpha-IPM synthase/homocitrate synthase family.
  
 
 0.944
leuA-2
2-isopropylmalate synthase.
  
 
 0.944
pdhC
Pyruvate dehydrogenase complex E2,dihydrolipoamide acetyltransferase.
  
 
 0.943
acdA
Acetyl-coa synthetase (ADP-forming), alpha subunit.
 
 
 0.939
acdAB
acetyl-CoA synthetase (ADP-forming), alpha and beta subunit fusion.
 
 
 0.939
acdB
Acetyl-coa synthetase (ADP-forming), beta subunit.
  
 
 0.929
Your Current Organism:
Methanocella arvoryzae
NCBI taxonomy Id: 351160
Other names: M. arvoryzae MRE50, Methanocella arvoryzae MRE50, Methanocella arvoryzae str. MRE50, Methanocella arvoryzae strain MRE50, uncultured methanogenic archaeon RC-I, uncultured methanogenic archaeon Rice Cluster I
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