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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RCIX408Conserved hypothetical protein. (193 aa)    
Predicted Functional Partners:
RCIX407
Conserved hypothetical protein.
 
   
 0.955
LRC263
Hypothetical protein.
 
   
 0.780
RCIX1118
Putative signal sequence peptidase; Similar to orf41 of fosmid clone 1B6mr2.
  
     0.751
RCIX752
Signal sequence peptidase.
  
     0.747
RCIX1015
Signal sequence peptidase; Similar to orf41 of fosmid clone 1B6mr2.
  
     0.746
RCIX1120
Putative signal sequence peptidase; Similar to orf41 of fosmid clone 1B6mr2.
  
     0.743
serB-1
Putative phosphoserine phosphatase.
  
     0.742
RCIX2571
Conserved hypothetical protein.
  
     0.723
RCIX2572
Conserved hypothetical protein.
  
     0.719
LRC541
Transmembrane oligosaccharyltransferase.
  
     0.715
Your Current Organism:
Methanocella arvoryzae
NCBI taxonomy Id: 351160
Other names: M. arvoryzae MRE50, Methanocella arvoryzae MRE50, Methanocella arvoryzae str. MRE50, Methanocella arvoryzae strain MRE50, uncultured methanogenic archaeon RC-I, uncultured methanogenic archaeon Rice Cluster I
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