STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RCIX482Putative hydrogenase 2(4Fe-4S) ferredoxin component (EchF-like). (221 aa)    
Predicted Functional Partners:
RCIX481
Putative hydrogenase membrane component (EchB-like).
 
 0.998
echD
Ech hydrogenase, subunit D.
 
 0.996
RCIX483
[NiFe]-hydrogenase, small subunit (EchC-like).
 
 
 0.981
RCIX479
[NiFe]-hydrogenase, large subunit (EchE-like).
 
 
 0.979
echA
Ech hydrogenase, subunit A.
 
 
 0.969
RCIX557
Predicted oxidoreductase integral membrane component (CooM/NuoL-like).
 
 
 0.969
echB
Ech hydrogenase, subunit B.
 
 
 0.936
echC
Ech hydrogenase, subunit C.
 
 
 0.923
RCIX2382
Hydrogenase, small subunit-like protein (HycG-like).
 
 
 0.919
RCIX2386
Hydrogenase, membrane subunit 3-like protein (EchB-like).
  
 
 0.917
Your Current Organism:
Methanocella arvoryzae
NCBI taxonomy Id: 351160
Other names: M. arvoryzae MRE50, Methanocella arvoryzae MRE50, Methanocella arvoryzae str. MRE50, Methanocella arvoryzae strain MRE50, uncultured methanogenic archaeon RC-I, uncultured methanogenic archaeon Rice Cluster I
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