STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RCIX557Predicted oxidoreductase integral membrane component (CooM/NuoL-like). (481 aa)    
Predicted Functional Partners:
RCIX481
Putative hydrogenase membrane component (EchB-like).
 
 
 0.994
echD
Ech hydrogenase, subunit D.
  
 
 0.983
RCIX482
Putative hydrogenase 2(4Fe-4S) ferredoxin component (EchF-like).
 
 
 0.969
echF
Ech hydrogenase, subunit F.
  
 
 0.963
RCIX2384
Hydrogenase, membrane subunit 1-like protein (EchA-like).
 
 
0.952
RCIX2387
Hydrogenase, membrane subunit 4-like protein (HycC-like).
 
 
0.951
frhD-2
Coenzyme F420-reducing hydrogenase, delta subunit (maturation peptidase).
 
   
 0.842
RCIX443
Putative response regulator (CheY-like).
   
 
 0.823
LRC312
Conserved hypothetical protein; Identical to orf23 of fosmid clone 3D10mr4, similar to orf24 and orf25 of fosmid clone 3D10mr4.
 
 
 
 0.667
LRC313
Hypothetical protein; Identical to orf24 of fosmid clone 3D10mr4, similar to orf23 and orf25 of fosmid clone 3D10mr4.
 
 
 
 0.660
Your Current Organism:
Methanocella arvoryzae
NCBI taxonomy Id: 351160
Other names: M. arvoryzae MRE50, Methanocella arvoryzae MRE50, Methanocella arvoryzae str. MRE50, Methanocella arvoryzae strain MRE50, uncultured methanogenic archaeon RC-I, uncultured methanogenic archaeon Rice Cluster I
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