STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GGTB1Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX. (392 aa)    
Predicted Functional Partners:
B8C5A0_THAPS
RAB geranylgeranyl transferase.
   
 0.983
B8BUA8_THAPS
Uncharacterized protein.
    
 0.976
B8C3B5_THAPS
Uncharacterized protein.
   
 0.964
B8CG64_THAPS
TYR_PHOSPHATASE_2 domain-containing protein.
    
 0.880
B8BY70_THAPS
Rab-like rab-type small G protein.
    
 0.877
B8C362_THAPS
Ypt1-like rab-type small G protein.
    
 0.849
THAPSDRAFT_843
Rab-type small G protein.
    
 0.849
B8BVR9_THAPS
At-like rab-type small G protein.
     
 0.829
B8CBU5_THAPS
Synaptobrevin; Belongs to the synaptobrevin family.
    
 
 0.824
B8BVN8_THAPS
Rab GDP dissociation inhibitor; Belongs to the Rab GDI family.
   
 0.804
Your Current Organism:
Thalassiosira pseudonana
NCBI taxonomy Id: 35128
Other names: T. pseudonana
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