B8C514_THAPS protein (Thalassiosira pseudonana)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

B8C514_THAPS

Uncharacterized protein. (286 aa)

Predicted Functional Partners:

B8BSS5_THAPS

0.986

THAPS_7265

0.973

RS13

0.973

B8LDC4_THAPS

0.973

B8C5R0_THAPS

0.972

RS23

0.969

RS6

0.964

RS7

0.963

RS8

0.963

RS3A

0.963

Your Current Organism:

Thalassiosira pseudonana

NCBI taxonomy Id: 35128
Other names: T. pseudonana

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
B8BSS5_THAPS	B8C514_THAPS	B8BSS5	B8C514	Uncharacterized protein.	Uncharacterized protein.	0.986
B8BSS5_THAPS	B8C5R0_THAPS	B8BSS5	B8C5R0	Uncharacterized protein.	KH domain-containing protein.	0.999
B8BSS5_THAPS	B8LDC4_THAPS	B8BSS5	B8LDC4	Uncharacterized protein.	Predicted protein.	0.999
B8BSS5_THAPS	RS13	B8BSS5	B8C0K5	Uncharacterized protein.	RS13, ribosomal protein 13 40S small ribosomal subunit; Belongs to the universal ribosomal protein uS15 family.	0.996
B8BSS5_THAPS	RS23	B8BSS5	B8C1Z7	Uncharacterized protein.	RS23, ribosomal protein 23 40S small ribosomal subunit; Belongs to the universal ribosomal protein uS12 family.	0.979
B8BSS5_THAPS	RS3A	B8BSS5	B8CET5	Uncharacterized protein.	40S ribosomal protein S3a; Belongs to the eukaryotic ribosomal protein eS1 family.	0.995
B8BSS5_THAPS	RS6	B8BSS5	B8CCL8	Uncharacterized protein.	40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.	0.998
B8BSS5_THAPS	RS7	B8BSS5	B8BUN1	Uncharacterized protein.	40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family.	0.998
B8BSS5_THAPS	RS8	B8BSS5	B8CB96	Uncharacterized protein.	40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family.	0.992
B8BSS5_THAPS	THAPS_7265	B8BSS5	B5YNT4	Uncharacterized protein.	Predicted protein.	0.999
B8C514_THAPS	B8BSS5_THAPS	B8C514	B8BSS5	Uncharacterized protein.	Uncharacterized protein.	0.986
B8C514_THAPS	B8C5R0_THAPS	B8C514	B8C5R0	Uncharacterized protein.	KH domain-containing protein.	0.972
B8C514_THAPS	B8LDC4_THAPS	B8C514	B8LDC4	Uncharacterized protein.	Predicted protein.	0.973
B8C514_THAPS	RS13	B8C514	B8C0K5	Uncharacterized protein.	RS13, ribosomal protein 13 40S small ribosomal subunit; Belongs to the universal ribosomal protein uS15 family.	0.973
B8C514_THAPS	RS23	B8C514	B8C1Z7	Uncharacterized protein.	RS23, ribosomal protein 23 40S small ribosomal subunit; Belongs to the universal ribosomal protein uS12 family.	0.969
B8C514_THAPS	RS3A	B8C514	B8CET5	Uncharacterized protein.	40S ribosomal protein S3a; Belongs to the eukaryotic ribosomal protein eS1 family.	0.963
B8C514_THAPS	RS6	B8C514	B8CCL8	Uncharacterized protein.	40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.	0.964
B8C514_THAPS	RS7	B8C514	B8BUN1	Uncharacterized protein.	40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family.	0.963
B8C514_THAPS	RS8	B8C514	B8CB96	Uncharacterized protein.	40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family.	0.963
B8C514_THAPS	THAPS_7265	B8C514	B5YNT4	Uncharacterized protein.	Predicted protein.	0.973