B8C5F0_THAPS protein (Thalassiosira pseudonana)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

B8C5F0_THAPS

Sigma70_r2 domain-containing protein. (345 aa)

Predicted Functional Partners:

B8C3F5_THAPS

0.758

RPC1

0.694

RPA1

0.694

RP3A

0.660

B8CCH8_THAPS

0.660

B8CDX0_THAPS

0.593

B8CDX1_THAPS

0.593

rpoB

0.573

RPC2

0.573

RPB21

0.573

Your Current Organism:

Thalassiosira pseudonana

NCBI taxonomy Id: 35128
Other names: T. pseudonana

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
B8C3F5_THAPS	B8C5F0_THAPS	B8C3F5	B8C5F0	Dna-directed RNA polymerase i.	Sigma70_r2 domain-containing protein.	0.758
B8C3F5_THAPS	B8CCH8_THAPS	B8C3F5	B8CCH8	Dna-directed RNA polymerase i.	Dna-directed RNA polymerase I 40kDa polypeptide, rpo1-1-like protein.	0.999
B8C3F5_THAPS	RP3A	B8C3F5	B8BWN8	Dna-directed RNA polymerase i.	RP3A,-like protein to dna-directed RNA polymerase II third largest subunit.	0.999
B8C3F5_THAPS	RPA1	B8C3F5	B8C4Z8	Dna-directed RNA polymerase i.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
B8C3F5_THAPS	RPB21	B8C3F5	B8C598	Dna-directed RNA polymerase i.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.975
B8C3F5_THAPS	RPC1	B8C3F5	B8C4M1	Dna-directed RNA polymerase i.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
B8C3F5_THAPS	RPC2	B8C3F5	B8BQM2	Dna-directed RNA polymerase i.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
B8C3F5_THAPS	rpoB	B8C3F5	A0T0R1	Dna-directed RNA polymerase i.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.963
B8C5F0_THAPS	B8C3F5_THAPS	B8C5F0	B8C3F5	Sigma70_r2 domain-containing protein.	Dna-directed RNA polymerase i.	0.758
B8C5F0_THAPS	B8CCH8_THAPS	B8C5F0	B8CCH8	Sigma70_r2 domain-containing protein.	Dna-directed RNA polymerase I 40kDa polypeptide, rpo1-1-like protein.	0.660
B8C5F0_THAPS	B8CDX0_THAPS	B8C5F0	B8CDX0	Sigma70_r2 domain-containing protein.	ZnF_CHCC domain-containing protein.	0.593
B8C5F0_THAPS	B8CDX1_THAPS	B8C5F0	B8CDX1	Sigma70_r2 domain-containing protein.	Toprim domain-containing protein.	0.593
B8C5F0_THAPS	RP3A	B8C5F0	B8BWN8	Sigma70_r2 domain-containing protein.	RP3A,-like protein to dna-directed RNA polymerase II third largest subunit.	0.660
B8C5F0_THAPS	RPA1	B8C5F0	B8C4Z8	Sigma70_r2 domain-containing protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.694
B8C5F0_THAPS	RPB21	B8C5F0	B8C598	Sigma70_r2 domain-containing protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.573
B8C5F0_THAPS	RPC1	B8C5F0	B8C4M1	Sigma70_r2 domain-containing protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.694
B8C5F0_THAPS	RPC2	B8C5F0	B8BQM2	Sigma70_r2 domain-containing protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.573
B8C5F0_THAPS	rpoB	B8C5F0	A0T0R1	Sigma70_r2 domain-containing protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.573
B8CCH8_THAPS	B8C3F5_THAPS	B8CCH8	B8C3F5	Dna-directed RNA polymerase I 40kDa polypeptide, rpo1-1-like protein.	Dna-directed RNA polymerase i.	0.999
B8CCH8_THAPS	B8C5F0_THAPS	B8CCH8	B8C5F0	Dna-directed RNA polymerase I 40kDa polypeptide, rpo1-1-like protein.	Sigma70_r2 domain-containing protein.	0.660