STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B8C757_THAPSFA_desaturase domain-containing protein. (434 aa)    
Predicted Functional Partners:
B8BQ18_THAPS
Uncharacterized protein.
   
 0.541
B8BVH4_THAPS
WW domain-containing protein.
   
 0.507
B8BYY7_THAPS
Uncharacterized protein.
    
 0.502
THAPS_17039
Predicted protein.
   
 0.429
RPB5
RPB5,-like protein to RNA polymerase i.
    
  0.425
B8C460_THAPS
19kDa subunit of RNA polymerase.
   
  0.425
Rpb8
DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.
    
  0.425
B8CBW6_THAPS
Cleavage and polyadenylation specificity factor subunit 2.
   
 0.419
B8BY97_THAPS
Uncharacterized protein.
   
 0.416
THAPS_38060
Predicted protein.
    
 0.415
Your Current Organism:
Thalassiosira pseudonana
NCBI taxonomy Id: 35128
Other names: T. pseudonana
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