STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B8C9S1_THAPStRNA pseudouridine synthase. (162 aa)    
Predicted Functional Partners:
B8BUJ2_THAPS
Uncharacterized protein.
   
 
 0.700
B8C9P2_THAPS
IGPS domain-containing protein.
  
  
 0.698
trpAB
Tryptophane synthase.
  
  
 0.693
B8C3Y5_THAPS
Component II, glutamine amidotransferase.
     
 0.681
B8C9P1_THAPS
Indole-3-glycerol-phosphate synthase.
     
 0.681
B8BYU5_THAPS
FtsJ domain-containing protein.
   
 
 0.664
RSP1
40S ribosomal protein SA; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.
 
    0.656
B8BV35_THAPS
Uncharacterized protein.
   
    0.654
B8CA75_THAPS
Elongator complex protein 3; Catalytic tRNA acetyltransferase subunit of the RNA polymerase II elongator complex, which is a component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation.
   
 
 0.652
B8BPW9_THAPS
TRUD domain-containing protein.
   
 
 0.646
Your Current Organism:
Thalassiosira pseudonana
NCBI taxonomy Id: 35128
Other names: T. pseudonana
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.