STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B8LER5_THAPSPredicted protein; Belongs to the ATPase C chain family. (82 aa)    
Predicted Functional Partners:
atpI
ATP synthase subunit a, chloroplastic; Key component of the proton channel; it plays a direct role in the translocation of protons across the membrane.
  
 0.962
VAT3
V-type proton ATPase subunit; Subunit of the integral membrane V0 complex of vacuolar ATPase. Vacuolar ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells, thus providing most of the energy required for transport processes in the vacuolar system. Belongs to the V-ATPase V0D/AC39 subunit family.
  
 0.950
B8C2N9_THAPS
V-type proton ATPase subunit a; Essential component of the vacuolar proton pump (V-ATPase), a multimeric enzyme that catalyzes the translocation of protons across the membranes. Required for assembly and activity of the V-ATPase.
  
 0.948
B8BS55_THAPS
V-type h-atpase subunit; Belongs to the V-ATPase proteolipid subunit family.
   
 0.936
B8C0W4_THAPS
ATP synthase.
  
 0.933
atpE
ATP synthase epsilon chain, chloroplastic; Produces ATP from ADP in the presence of a proton gradient across the membrane.
  
 0.931
B8C1R6_THAPS
Uncharacterized protein.
  
 0.931
THAPS_19298
F-type H-ATPase delta subunit.
  
 0.930
B8C6R8_THAPS
Putative v-type h-ATPase subunit.
  
 0.926
VAT2
Vacuolar proton pump alpha subunit.
  
 0.926
Your Current Organism:
Thalassiosira pseudonana
NCBI taxonomy Id: 35128
Other names: T. pseudonana
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