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Thaps32098 protein (Thalassiosira pseudonana) - STRING interaction network
"Thaps32098" - Histone deactylase 1 HDAC Hda1p HDA1 in Thalassiosira pseudonana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Thaps32098Histone deactylase 1 HDAC Hda1p HDA1; Histone deacetylase (419 aa)    
Predicted Functional Partners:
Thaps42508
Chromatin assembly factor (466 aa)
     
 
  0.850
MYB21
MYB DNA binding protein/ transcription factor-like protein (125 aa)
     
 
  0.834
Thaps268118
Uncharacterized protein (654 aa)
     
 
  0.793
Thaps269060
Histone deacetylase (853 aa)
     
 
0.745
Thaps268655
Histone deacetylase 1 HDAC Hda1p (637 aa)
   
 
  0.725
Thaps24078
Uncharacterized protein (1660 aa)
     
 
  0.719
Thaps16384
Uncharacterized protein (211 aa)
     
 
  0.704
Thaps35510
SET-domain containing protein (173 aa)
   
 
  0.681
ZFP16
Uncharacterized protein (865 aa)
     
 
  0.677
Thaps24331
Predicted protein (1718 aa)
     
 
  0.677
Your Current Organism:
Thalassiosira pseudonana
NCBI taxonomy Id: 35128
Other names: T. pseudonana, Thalassiosira pseudonana
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