STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Maqu_0306PFAM: Ion transport 2 domain protein,; KEGG: ppu:PP_3293 hypothetical protein. (148 aa)    
Predicted Functional Partners:
Maqu_1749
KEGG: hch:HCH_02348 hypothetical protein.
  
     0.579
Maqu_0307
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: noc:Noc_2937 secretion protein HlyD.
       0.544
Maqu_0308
PFAM: acriflavin resistance protein; KEGG: noc:Noc_2936 acriflavin resistance protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
       0.539
Maqu_0309
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rpc:RPC_0080 ABC transporter related.
       0.513
Maqu_0310
PFAM: protein of unknown function DUF214; KEGG: rsp:RSP_1541 putative ABC transporter, fused inner membrane subunits.
       0.513
Maqu_0311
KEGG: rpd:RPD_4398 hypothetical protein.
       0.513
Your Current Organism:
Marinobacter hydrocarbonoclasticus
NCBI taxonomy Id: 351348
Other names: M. hydrocarbonoclasticus VT8, Marinobacter aquaeolei VT8, Marinobacter aquaeolei str. VT8, Marinobacter aquaeolei strain VT8, Marinobacter hydrocarbonoclasticus VT8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.