STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Maqu_0780PFAM: O-antigen polymerase; KEGG: rso:RSc2204 probable transmembrane protein. (415 aa)    
Predicted Functional Partners:
Maqu_0779
PFAM: glycosyl transferase, group 1; KEGG: sgl:SG2202 putative lipopolysaccharide glycosyltransferase.
  
 
 0.979
Maqu_0789
TIGRFAM: lipopolysaccharide heptosyltransferase II; PFAM: glycosyl transferase, family 9; KEGG: csa:Csal_0009 lipopolysaccharide heptosyltransferase II.
  
 
 0.953
Maqu_0801
Three-deoxy-D-manno-octulosonic-acid transferase domain protein; Involved in lipopolysaccharide (LPS) biosynthesis. Catalyzes the transfer of 3-deoxy-D-manno-octulosonate (Kdo) residue(s) from CMP- Kdo to lipid IV(A), the tetraacyldisaccharide-1,4'-bisphosphate precursor of lipid A; Belongs to the glycosyltransferase group 1 family.
    
 0.918
Maqu_1661
PFAM: sugar transferase; KEGG: hch:HCH_02714 sugar transferase involved in lipopolysaccharide synthesis.
  
  
 0.911
Maqu_0781
PFAM: WavE lipopolysaccharide synthesis; KEGG: vch:VC0229 hypothetical protein.
  
  
 0.834
Maqu_0782
Hypothetical protein.
       0.773
Maqu_0783
Hypothetical protein.
       0.773
Maqu_0785
PFAM: glycosyl transferase, family 9; KEGG: pha:PSHAa2318 ADP-heptose:LPS heptosyltransferase.
  
  
 0.741
hldE
D-alpha,beta-D-heptose 7-phosphate 1-kinase / D-beta-D-heptose 1-phosphate adenylyltransferase; Catalyzes the phosphorylation of D-glycero-D-manno-heptose 7- phosphate at the C-1 position to selectively form D-glycero-beta-D- manno-heptose-1,7-bisphosphate; In the C-terminal section; belongs to the cytidylyltransferase family.
     
 0.725
Maqu_0784
TIGRFAM: D,D-heptose 1,7-bisphosphate phosphatase; histidinol-phosphate phosphatase family protein; hydrolase, HAD-superfamily, subfamily IIIA; KEGG: ppr:PBPRA2939 putative histidinol phosphatase-related protein.
       0.682
Your Current Organism:
Marinobacter hydrocarbonoclasticus
NCBI taxonomy Id: 351348
Other names: M. hydrocarbonoclasticus VT8, Marinobacter aquaeolei VT8, Marinobacter aquaeolei str. VT8, Marinobacter aquaeolei strain VT8, Marinobacter hydrocarbonoclasticus VT8
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.