STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Maqu_3571PFAM: regulatory protein, TetR; KEGG: hch:HCH_01013 transcriptional regulator. (227 aa)    
Predicted Functional Partners:
Maqu_3574
PFAM: glucose-methanol-choline oxidoreductase; GMC oxidoreductase; KEGG: rme:Rmet_3596 glucose-methanol-choline oxidoreductase.
 
  
 0.711
Maqu_3572
PFAM: aldehyde dehydrogenase; KEGG: hch:HCH_01011 NAD-dependent aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
 
     0.661
Maqu_3573
KEGG: pau:PA14_04790 hypothetical protein.
 
   
 0.656
Maqu_1492
TIGRFAM: poly(hydroxyalkanoate) granule-associated protein; PFAM: poly granule associated family protein; KEGG: hch:HCH_02755 hypothetical protein.
 
     0.650
Maqu_0816
PFAM: Patatin; KEGG: hch:HCH_05982 predicted esterase of the alpha-beta hydrolase superfamily.
 
     0.609
Maqu_1798
PFAM: membrane protein involved in aromatic hydrocarbon degradation; KEGG: hch:HCH_02167 long-chain fatty acid transport protein.
  
     0.547
Maqu_2338
KEGG: hch:HCH_05040 hypothetical protein.
  
  
 0.535
Maqu_1800
KEGG: hch:HCH_02166 hypothetical protein.
  
     0.484
Maqu_1801
PFAM: peptidase C39, bacteriocin processing; KEGG: hch:HCH_02165 predicted double-glycine peptidase.
  
     0.468
Maqu_3756
PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: hch:HCH_00560 probable membrane protein, transporter-related.
  
     0.433
Your Current Organism:
Marinobacter hydrocarbonoclasticus
NCBI taxonomy Id: 351348
Other names: M. hydrocarbonoclasticus VT8, Marinobacter aquaeolei VT8, Marinobacter aquaeolei str. VT8, Marinobacter aquaeolei strain VT8, Marinobacter hydrocarbonoclasticus VT8
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