STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Gura_2472PFAM: aminotransferase, class V; aromatic amino acid beta-eliminating lyase/threonine aldolase. (377 aa)    
Predicted Functional Partners:
Gura_1832
Fe-S cluster assembly protein NifU; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins.
 
 0.999
Gura_2423
PFAM: UBA/THIF-type NAD/FAD binding protein.
   
 0.956
Gura_0450
SMART: Rhodanese domain protein.
   
 0.915
Gura_1559
PFAM: Rhodanese domain protein.
   
 0.915
Gura_1560
PFAM: Rhodanese domain protein.
   
 0.915
Gura_1564
PFAM: Rhodanese domain protein.
   
 0.915
Gura_1493
Aminotransferase, class V; Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine.
  
  
 
0.912
Gura_1833
Aminotransferase, class V; Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine.
  
  
 
0.912
Gura_4147
PFAM: protein of unknown function DUF1526.
  
 0.856
Gura_2476
Hypothetical protein.
 
   
 0.812
Your Current Organism:
Geobacter uraniireducens
NCBI taxonomy Id: 351605
Other names: G. uraniireducens Rf4, Geobacter uraniireducens Rf4, Geobacter uraniireducens str. Rf4, Geobacter uraniireducens strain Rf4, Geobacter uraniumreducens JCM 13001
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.