STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Csac_1077PFAM: glycoside hydrolase, family 5; type 3a, cellulose-binding domain protein. (1303 aa)    
Predicted Functional Partners:
Csac_0663
Mannan endo-1,4-beta-mannosidase; PFAM: glycoside hydrolase, family 26; Belongs to the glycosyl hydrolase 26 family.
 
  
  0.996
Csac_1080
PFAM: glycoside hydrolase, family 5; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
  
  
0.900
Csac_1312
PFAM: PfkB domain protein.
     
 0.801
Csac_2410
Cellulose 1,4-beta-cellobiosidase; PFAM: glycoside hydrolase, family 10; Carbohydrate-binding, CenC domain protein domain protein.
 
   
 0.722
Csac_0696
Endo-1,4-beta-xylanase; PFAM: glycoside hydrolase, family 10; Carbohydrate-binding, CenC domain protein domain protein.
 
   
 0.712
Csac_2405
Endo-1,4-beta-xylanase; PFAM: glycoside hydrolase, family 10.
 
   
 0.675
Csac_2408
Endo-1,4-beta-xylanase; PFAM: glycoside hydrolase, family 10.
 
   
 0.671
Csac_2548
PFAM: glycoside hydrolase, family 16; Carbohydrate-binding, CenC domain protein domain protein; Carbohydrate binding family 6.
  
     0.656
Csac_0204
PFAM: glycoside hydrolase, family 10.
  
   
 0.645
Csac_1560
PFAM: glycoside hydrolase, family 43; Belongs to the glycosyl hydrolase 43 family.
  
     0.639
Your Current Organism:
Caldicellulosiruptor saccharolyticus
NCBI taxonomy Id: 351627
Other names: C. saccharolyticus DSM 8903, Caldicellulosiruptor saccharolyticus DSM 8903, Caldicellulosiruptor saccharolyticus str. DSM 8903, Caldicellulosiruptor saccharolyticus strain DSM 8903
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