STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Csac_1560PFAM: glycoside hydrolase, family 43; Belongs to the glycosyl hydrolase 43 family. (488 aa)    
Predicted Functional Partners:
Csac_1561
Alpha-N-arabinofuranosidase; PFAM: alpha-L-arabinofuranosidase domain protein.
 
  
 0.839
Csac_1078
Cellulose 1,4-beta-cellobiosidase; PFAM: glycoside hydrolase, family 10; glycoside hydrolase, family 5; type 3a, cellulose-binding domain protein.
 
   
 0.775
Csac_2408
Endo-1,4-beta-xylanase; PFAM: glycoside hydrolase, family 10.
 
   
 0.742
Csac_0696
Endo-1,4-beta-xylanase; PFAM: glycoside hydrolase, family 10; Carbohydrate-binding, CenC domain protein domain protein.
 
   
 0.735
Csac_2689
Alpha-glucuronidase; PFAM: glycoside hydrolase family 67; glycosyl hydrolase 67 C-teriminal domain protein; Glycosyl hydrolase 67 middle domain protein; Belongs to the glycosyl hydrolase 67 family.
 
   
 0.733
Csac_2410
Cellulose 1,4-beta-cellobiosidase; PFAM: glycoside hydrolase, family 10; Carbohydrate-binding, CenC domain protein domain protein.
 
   
 0.732
Csac_2405
Endo-1,4-beta-xylanase; PFAM: glycoside hydrolase, family 10.
 
   
 0.716
Csac_1559
PFAM: binding-protein-dependent transport systems inner membrane component.
  
    0.700
Csac_0437
Hypothetical protein; Belongs to the glycosyl hydrolase 43 family.
  
   
 0.679
Csac_0663
Mannan endo-1,4-beta-mannosidase; PFAM: glycoside hydrolase, family 26; Belongs to the glycosyl hydrolase 26 family.
  
   
 0.673
Your Current Organism:
Caldicellulosiruptor saccharolyticus
NCBI taxonomy Id: 351627
Other names: C. saccharolyticus DSM 8903, Caldicellulosiruptor saccharolyticus DSM 8903, Caldicellulosiruptor saccharolyticus str. DSM 8903, Caldicellulosiruptor saccharolyticus strain DSM 8903
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