STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
uxaCPFAM: Glucuronate isomerase. (464 aa)    
Predicted Functional Partners:
Csac_2688
PFAM: Mannitol dehydrogenase, C-terminal domain; Mannitol dehydrogenase rossman, N-terminal domain.
 
 
 0.983
uxuA
Mannonate dehydratase; Catalyzes the dehydration of D-mannonate.
 
  
 0.982
Csac_2748
PFAM: glycoside hydrolase, family 4.
 
  
  0.913
Csac_0723
PFAM: class II aldolase/adducin family protein.
     
 0.850
Csac_1561
Alpha-N-arabinofuranosidase; PFAM: alpha-L-arabinofuranosidase domain protein.
     
 0.825
Csac_2411
PFAM: Carbohydrate-binding, CenC domain protein domain protein; Carbohydrate binding family 6; glycoside hydrolase, family 43; SMART: cellulose binding, type IV.
    
 0.811
Csac_2404
PFAM: glycoside hydrolase, family 39.
     
  0.800
Csac_2409
Xylan 1,4-beta-xylosidase; PFAM: glycoside hydrolase, family 39.
     
  0.800
eno
Phosphopyruvate hydratase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis; Belongs to the enolase family.
     
 0.709
xylB
PFAM: carbohydrate kinase, FGGY.
     
 0.663
Your Current Organism:
Caldicellulosiruptor saccharolyticus
NCBI taxonomy Id: 351627
Other names: C. saccharolyticus DSM 8903, Caldicellulosiruptor saccharolyticus DSM 8903, Caldicellulosiruptor saccharolyticus str. DSM 8903, Caldicellulosiruptor saccharolyticus strain DSM 8903
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