STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Csac_2737PFAM: oxidoreductase domain protein; Oxidoreductase, C-terminal domain. (333 aa)    
Predicted Functional Partners:
Csac_2738
PFAM: oxidoreductase domain protein; Oxidoreductase, C-terminal domain.
 
  
 
0.983
Csac_2736
PFAM: beta-lactamase domain protein.
  
    0.703
Csac_2739
PFAM: Mandelate racemase/muconate lactonizing enzyme, N-terminal domain protein; Mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein.
 
     0.698
Csac_1802
Glutamine--scyllo-inositol transaminase; PFAM: aminotransferase, class V; Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; Belongs to the DegT/DnrJ/EryC1 family.
 
  
 0.663
Csac_1173
PFAM: Xylose isomerase domain protein TIM barrel.
 
  
 0.626
Csac_0390
PFAM: AP endonuclease 2 domain protein; Xylose isomerase domain protein TIM barrel.
 
  
 0.586
Csac_2740
PFAM: binding-protein-dependent transport systems inner membrane component.
       0.577
Csac_0396
PFAM: Xylose isomerase domain protein TIM barrel.
 
  
 0.568
Csac_2741
PFAM: binding-protein-dependent transport systems inner membrane component.
       0.542
Csac_2735
PFAM: regulatory protein, IclR.
  
    0.530
Your Current Organism:
Caldicellulosiruptor saccharolyticus
NCBI taxonomy Id: 351627
Other names: C. saccharolyticus DSM 8903, Caldicellulosiruptor saccharolyticus DSM 8903, Caldicellulosiruptor saccharolyticus str. DSM 8903, Caldicellulosiruptor saccharolyticus strain DSM 8903
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