STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
bnzABenzene 1,2-dioxygenase subunit alpha; Catalyzes both the oxidation of benzene and toluene (450 aa)    
Predicted Functional Partners:
bnzB
Benzene 1,2-dioxygenase subunit beta; Catalyzes both the oxidation of benzene and toluene. The beta subunit may be responsible for the substrate specificity of the enzyme
 
 0.999
todD
Cis-toluene dihydrodiol dehydrogenase; PFAM: short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family
 
  
 0.993
todB
Toluene 1,2-dioxygenase system ferredoxin subunit; This protein seems to be a 2Fe-2S ferredoxin
 
 0.978
todA
Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase component; Part of the electron transfer component of toluene 1,2- dioxygenase, transfers electrons from ferredoxin (TodB) to NADH
  
 0.956
Pput_0350
TIGRFAM: Formaldehyde dehydrogenase, glutathione-independent; PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein
     
  0.900
Pput_2897
PFAM: aromatic-ring-hydroxylating dioxygenase, beta subunit
 
 
 0.889
todF
PFAM: alpha/beta hydrolase fold
 
   
 0.845
Pput_2553
PFAM: aromatic-ring-hydroxylating dioxygenase, beta subunit
 
 0.819
todE
3-methylcatechol 2,3-dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; Belongs to the extradiol ring-cleavage dioxygenase family
 
   
 0.778
todJ
TodF product hydratase; Converts the product of 2-hydroxy-6-oxo-2,4- heptadienoate hydrolase
 
   
 0.706
Your Current Organism:
Pseudomonas putida F1
NCBI taxonomy Id: 351746
Other names: P. putida F1, Pseudomonas putida F1, Pseudomonas putida str. F1, Pseudomonas putida strain F1
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