Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| EFB89726.1 | EFB90717.1 | HMPREF7215_1334 | HMPREF7215_0585 | Pyridine nucleotide-disulfide oxidoreductase; Identified by match to protein family HMM PF00070; match to protein family HMM PF07992. | Ankyrin repeat protein; Identified by match to protein family HMM PF00023. | 0.673 |
| EFB89726.1 | EFB91407.1 | HMPREF7215_1334 | HMPREF7215_0467 | Pyridine nucleotide-disulfide oxidoreductase; Identified by match to protein family HMM PF00070; match to protein family HMM PF07992. | Ankyrin repeat protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by glimmer; putative. | 0.673 |
| EFB89726.1 | metG | HMPREF7215_1334 | HMPREF7215_0932 | Pyridine nucleotide-disulfide oxidoreductase; Identified by match to protein family HMM PF00070; match to protein family HMM PF07992. | methionine--tRNA ligase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation. | 0.461 |
| EFB90514.1 | EFB90717.1 | HMPREF7215_2150 | HMPREF7215_0585 | SNF2 family N-terminal domain protein; Identified by match to protein family HMM PF00176; match to protein family HMM PF00271. | Ankyrin repeat protein; Identified by match to protein family HMM PF00023. | 0.605 |
| EFB90514.1 | EFB91072.1 | HMPREF7215_2150 | HMPREF7215_0664 | SNF2 family N-terminal domain protein; Identified by match to protein family HMM PF00176; match to protein family HMM PF00271. | CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase; Identified by match to protein family HMM PF04464. | 0.907 |
| EFB90514.1 | EFB91407.1 | HMPREF7215_2150 | HMPREF7215_0467 | SNF2 family N-terminal domain protein; Identified by match to protein family HMM PF00176; match to protein family HMM PF00271. | Ankyrin repeat protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by glimmer; putative. | 0.605 |
| EFB90514.1 | dnaK | HMPREF7215_2150 | HMPREF7215_2276 | SNF2 family N-terminal domain protein; Identified by match to protein family HMM PF00176; match to protein family HMM PF00271. | Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family. | 0.825 |
| EFB90514.1 | sbcD | HMPREF7215_2150 | HMPREF7215_0737 | SNF2 family N-terminal domain protein; Identified by match to protein family HMM PF00176; match to protein family HMM PF00271. | Exonuclease SbcCD, D subunit; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family. | 0.779 |
| EFB90717.1 | EFB89726.1 | HMPREF7215_0585 | HMPREF7215_1334 | Ankyrin repeat protein; Identified by match to protein family HMM PF00023. | Pyridine nucleotide-disulfide oxidoreductase; Identified by match to protein family HMM PF00070; match to protein family HMM PF07992. | 0.673 |
| EFB90717.1 | EFB90514.1 | HMPREF7215_0585 | HMPREF7215_2150 | Ankyrin repeat protein; Identified by match to protein family HMM PF00023. | SNF2 family N-terminal domain protein; Identified by match to protein family HMM PF00176; match to protein family HMM PF00271. | 0.605 |
| EFB90717.1 | EFB91072.1 | HMPREF7215_0585 | HMPREF7215_0664 | Ankyrin repeat protein; Identified by match to protein family HMM PF00023. | CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase; Identified by match to protein family HMM PF04464. | 0.842 |
| EFB90717.1 | EFB91407.1 | HMPREF7215_0585 | HMPREF7215_0467 | Ankyrin repeat protein; Identified by match to protein family HMM PF00023. | Ankyrin repeat protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by glimmer; putative. | 0.775 |
| EFB90717.1 | dnaK | HMPREF7215_0585 | HMPREF7215_2276 | Ankyrin repeat protein; Identified by match to protein family HMM PF00023. | Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family. | 0.593 |
| EFB90717.1 | glgP | HMPREF7215_0585 | HMPREF7215_1008 | Ankyrin repeat protein; Identified by match to protein family HMM PF00023. | Alpha-glucan phosphorylase; Identified by match to protein family HMM PF00343; match to protein family HMM PF05693; match to protein family HMM TIGR02094. | 0.715 |
| EFB90717.1 | metG | HMPREF7215_0585 | HMPREF7215_0932 | Ankyrin repeat protein; Identified by match to protein family HMM PF00023. | methionine--tRNA ligase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation. | 0.729 |
| EFB90717.1 | rpsC | HMPREF7215_0585 | HMPREF7215_0912 | Ankyrin repeat protein; Identified by match to protein family HMM PF00023. | Ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. | 0.739 |
| EFB90717.1 | sbcD | HMPREF7215_0585 | HMPREF7215_0737 | Ankyrin repeat protein; Identified by match to protein family HMM PF00023. | Exonuclease SbcCD, D subunit; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family. | 0.664 |
| EFB91072.1 | EFB90514.1 | HMPREF7215_0664 | HMPREF7215_2150 | CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase; Identified by match to protein family HMM PF04464. | SNF2 family N-terminal domain protein; Identified by match to protein family HMM PF00176; match to protein family HMM PF00271. | 0.907 |
| EFB91072.1 | EFB90717.1 | HMPREF7215_0664 | HMPREF7215_0585 | CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase; Identified by match to protein family HMM PF04464. | Ankyrin repeat protein; Identified by match to protein family HMM PF00023. | 0.842 |
| EFB91072.1 | EFB91407.1 | HMPREF7215_0664 | HMPREF7215_0467 | CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase; Identified by match to protein family HMM PF04464. | Ankyrin repeat protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by glimmer; putative. | 0.842 |
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