STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB91610.1O-antigen polymerase; Identified by match to protein family HMM PF04932. (601 aa)    
Predicted Functional Partners:
lpxK
Tetraacyldisaccharide 4'-kinase; Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1-P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA).
 
  
  0.809
EFB90583.1
Hypothetical protein.
  
     0.770
EFB90947.1
Outer membrane protein; Identified by match to protein family HMM PF03938.
  
     0.756
EFB89524.1
Hypothetical protein; Identified by glimmer; putative.
  
   
 0.742
EFB91253.1
Sigma-70 region 2; Identified by match to protein family HMM PF04542; match to protein family HMM TIGR02937; Belongs to the sigma-70 factor family.
  
     0.741
EFB90951.1
Putative DNA polymerase III, delta subunit; This gene contains a nucleotide ambiguity which may be the result of a sequencing error.
  
    0.729
EFB89961.1
HAD hydrolase, family IA, variant 3; Identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; match to protein family HMM TIGR01549.
  
     0.711
EFB89522.1
Hypothetical protein; Identified by glimmer; putative.
  
     0.678
EFB89343.1
Identified by match to protein family HMM PF00395.
  
     0.665
EFB89362.1
Identified by match to protein family HMM PF00395.
  
     0.656
Your Current Organism:
Pyramidobacter piscolens
NCBI taxonomy Id: 352165
Other names: P. piscolens W5455, Pyramidobacter piscolens W5455, Pyramidobacter piscolens str. W5455, Pyramidobacter piscolens strain W5455, Synergistetes bacterium W5455
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.