STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dapADihydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA) (298 aa)    
Predicted Functional Partners:
dapB
Dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate
 
 
 0.984
asd
Aspartate-semialdehyde dehydrogenase; Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl- 4-phosphate
 
 
 0.935
EAQ72336.1
Oxidoreductase, short chain dehydrogenase/reductase family; Identified by match to protein family HMM PF00106
  
 0.916
hom
Homoserine dehydrogenase; Identified by match to protein family HMM PF00742; match to protein family HMM PF01842; match to protein family HMM PF03447
 
 
 0.913
CJJ81176_0826
Peptidase, m16 family; Belongs to the peptidase M16 family
  
  
 0.889
CJJ81176_1469
annotation not available
  
 
  0.886
pyrD
Dihydroorotate dehydrogenase; Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor
  
    0.885
nuoG
NADH-quinone oxidoreductase, G subunit; Identified by match to protein family HMM PF00037; match to protein family HMM PF00111
    
  0.872
CJJ81176_0610
Aspartate kinase, monofunctional class; Belongs to the aspartokinase family
 
 
 0.843
lysA
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine
 
  
 0.831
Your Current Organism:
Campylobacter jejuni 81176
NCBI taxonomy Id: 354242
Other names: C. jejuni subsp. jejuni 81-176, Campylobacter jejuni subsp. jejuni 81-176, Campylobacter jejuni subsp. jejuni str. 81-176, Campylobacter jejuni subsp. jejuni strain 81-176
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