STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpsIBelongs to the universal ribosomal protein uS9 family (129 aa)    
Predicted Functional Partners:
rplC
Ribosomal protein L3; Identified by match to protein family HMM PF00297
 
 
 0.999
rpsJ
Ribosomal protein s10; Involved in the binding of tRNA to the ribosomes
  
 0.999
rplU
Ribosomal protein l21; This protein binds to 23S rRNA in the presence of protein L20
  
 0.999
rpmA
Belongs to the bacterial ribosomal protein bL27 family
 
 
 0.999
rpmI
Belongs to the bacterial ribosomal protein bL35 family
   
 
 0.999
rplT
Ribosomal protein l20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
 
 0.999
rpmF
Belongs to the bacterial ribosomal protein bL32 family
  
 0.999
rpmB
Belongs to the bacterial ribosomal protein bL28 family
  
 
 0.999
rpmG
Belongs to the bacterial ribosomal protein bL33 family
  
 
 0.999
rplK
Ribosomal protein l11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
 
 
 0.999
Your Current Organism:
Campylobacter jejuni 81176
NCBI taxonomy Id: 354242
Other names: C. jejuni subsp. jejuni 81-176, Campylobacter jejuni subsp. jejuni 81-176, Campylobacter jejuni subsp. jejuni str. 81-176, Campylobacter jejuni subsp. jejuni strain 81-176
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