APZ42_015885 protein (Daphnia magna) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

APZ42_015885

Golgi SNAP receptor complex member 1; Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor. (238 aa)

Predicted Functional Partners:

EOG090X0GIP

0.999

APZ42_018667

0.999

APZ42_016501

0.998

APZ42_032780

0.991

EOG090X0HBC

0.991

APZ42_028742

0.990

APZ42_011463

0.987

APZ42_019868

0.978

APZ42_030707

0.964

EOG090X0AUC

0.963

Your Current Organism:

Daphnia magna

NCBI taxonomy Id: 35525
Other names: D. magna

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APZ42_011463	APZ42_015885	A0A0N8DFF7	A0A0N8BC74	Golgin subfamily A member.	Golgi SNAP receptor complex member 1; Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor.	0.987
APZ42_011463	APZ42_016501	A0A0N8DFF7	A0A165AG90	Golgin subfamily A member.	Synaptobrevin YKT6; Belongs to the synaptobrevin family.	0.683
APZ42_011463	APZ42_018667	A0A0N8DFF7	A0A0P6A860	Golgin subfamily A member.	Syntaxin-5; Belongs to the syntaxin family.	0.991
APZ42_011463	APZ42_019868	A0A0N8DFF7	A0A0P5VIF7	Golgin subfamily A member.	Syntaxin-12; Belongs to the syntaxin family.	0.646
APZ42_011463	APZ42_028742	A0A0N8DFF7	A0A0P5YTG8	Golgin subfamily A member.	General vesicular transport factor p115.	0.918
APZ42_011463	APZ42_032780	A0A0N8DFF7	A0A0P5M6C3	Golgin subfamily A member.	Sec1 family domain-containing protein; Belongs to the STXBP/unc-18/SEC1 family.	0.731
APZ42_011463	EOG090X0GIP	A0A0N8DFF7	A0A0N8D828	Golgin subfamily A member.	Golgi SNAP receptor complex member 2; Involved in transport of proteins from the cis/medial-Golgi to the trans-Golgi network.	0.737
APZ42_011463	EOG090X0HBC	A0A0N8DFF7	A0A162SSQ9	Golgin subfamily A member.	EOG090X0HBC; Belongs to the synaptobrevin family.	0.732
APZ42_015885	APZ42_011463	A0A0N8BC74	A0A0N8DFF7	Golgi SNAP receptor complex member 1; Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor.	Golgin subfamily A member.	0.987
APZ42_015885	APZ42_016501	A0A0N8BC74	A0A165AG90	Golgi SNAP receptor complex member 1; Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor.	Synaptobrevin YKT6; Belongs to the synaptobrevin family.	0.998
APZ42_015885	APZ42_018667	A0A0N8BC74	A0A0P6A860	Golgi SNAP receptor complex member 1; Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor.	Syntaxin-5; Belongs to the syntaxin family.	0.999
APZ42_015885	APZ42_019868	A0A0N8BC74	A0A0P5VIF7	Golgi SNAP receptor complex member 1; Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor.	Syntaxin-12; Belongs to the syntaxin family.	0.978
APZ42_015885	APZ42_028742	A0A0N8BC74	A0A0P5YTG8	Golgi SNAP receptor complex member 1; Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor.	General vesicular transport factor p115.	0.990
APZ42_015885	APZ42_030707	A0A0N8BC74	A0A164NI25	Golgi SNAP receptor complex member 1; Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor.	Putative FK506-binding protein 15.	0.964
APZ42_015885	APZ42_032780	A0A0N8BC74	A0A0P5M6C3	Golgi SNAP receptor complex member 1; Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor.	Sec1 family domain-containing protein; Belongs to the STXBP/unc-18/SEC1 family.	0.991
APZ42_015885	EOG090X0AUC	A0A0N8BC74	A0A0P5DYM1	Golgi SNAP receptor complex member 1; Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor.	Surfeit locus protein 4.	0.963
APZ42_015885	EOG090X0GIP	A0A0N8BC74	A0A0N8D828	Golgi SNAP receptor complex member 1; Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor.	Golgi SNAP receptor complex member 2; Involved in transport of proteins from the cis/medial-Golgi to the trans-Golgi network.	0.999
APZ42_015885	EOG090X0HBC	A0A0N8BC74	A0A162SSQ9	Golgi SNAP receptor complex member 1; Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor.	EOG090X0HBC; Belongs to the synaptobrevin family.	0.991
APZ42_016501	APZ42_011463	A0A165AG90	A0A0N8DFF7	Synaptobrevin YKT6; Belongs to the synaptobrevin family.	Golgin subfamily A member.	0.683
APZ42_016501	APZ42_015885	A0A165AG90	A0A0N8BC74	Synaptobrevin YKT6; Belongs to the synaptobrevin family.	Golgi SNAP receptor complex member 1; Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor.	0.998

page 1 of 5

Server load: low (26%) [HD]

Permalink

Network

Cooccurrence

Experiments

Coexpression

Databases

Neighborhood

Textmining

Fusion

© STRING Consortium 2024

Credits

Access

Info

About