STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APZ42_022985Nudix hydrolase 20, chloroplastic. (429 aa)    
Predicted Functional Partners:
APZ42_023254
YjeF N-terminal domain-containing protein.
  
 0.912
EOG090X07B6
mRNA-decapping enzyme 1B.
    
 0.906
APZ42_028523
Bis(5'-adenosyl)-triphosphatase.
   
 0.903
APZ42_025991
PAT1 1 protein.
    
 0.881
APZ42_013175
Enhancer of mRNA-decapping protein 4.
    
 0.838
APZ42_024056
5'-3' exoribonuclease 1.
    
 0.825
APZ42_022379
GTP:AMP phosphotransferase, mitochondrial; Belongs to the adenylate kinase family.
   
  0.804
LSM1
U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.
    
 0.775
APZ42_029539
Low molecular weight phosphotyrosine protein phosphatase 1.
     
 0.761
APZ42_012164
Guanosine-3',5'-bis(Diphosphate) 3'-pyrophosphohydrolase MESH1.
  
 0.746
Your Current Organism:
Daphnia magna
NCBI taxonomy Id: 35525
Other names: D. magna
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