STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APZ42_026039Oxygen-dependent coproporphyrinogen-III oxidase. (390 aa)    
Predicted Functional Partners:
APZ42_028232
Uroporphyrinogen decarboxylase; Belongs to the uroporphyrinogen decarboxylase family.
  
 0.978
APZ42_014483
Protoporphyrinogen oxidase; Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX.
  
 
 0.976
APZ42_015986
Uncharacterized protein.
  
 0.932
APZ42_012362
HemK methyltransferase family member 1.
   
 
 0.874
APZ42_017406
HemK methyltransferase family member 2.
   
 
 0.874
APZ42_011607
Porphobilinogen deaminase.
  
  
 0.685
APZ42_021627
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX.
     
 0.649
APZ42_015079
Uroporphyrinogen-III synthase.
     
 0.649
APZ42_004390
Uncharacterized protein.
     
 0.649
APZ42_028743
Prolyl 3-hydroxylase OGFOD1.
   
  
 0.644
Your Current Organism:
Daphnia magna
NCBI taxonomy Id: 35525
Other names: D. magna
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