STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APZ42_027422Lupus La protein. (577 aa)    
Predicted Functional Partners:
EOG090X0C5B
Zinc finger CCCH domain-containing protein 15.
   
    0.811
APZ42_011667
Methionine aminopeptidase 2; Cotranslationally removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met- Ala-, Cys, Gly, Pro, Ser, Thr, or Val).
   
    0.796
APZ42_029321
Small nuclear ribonucleoprotein Sm D2.
   
 
 0.790
EOG090X0NFO
Small nuclear ribonucleoprotein Sm D3.
   
   0.789
APZ42_028281
Nucleolar protein nop5.
   
   0.777
APZ42_021691
Interleukin enhancer-binding factor 2.
   
    0.677
APZ42_024151
DnaJ subfamily C member 2.
   
    0.674
APZ42_032863
Small nuclear ribonucleoprotein F; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
   0.666
APZ42_021634
Serine/arginine-rich splicing factor.
   
    0.648
APZ42_021683
Putative RNA-binding protein 1.
   
    0.648
Your Current Organism:
Daphnia magna
NCBI taxonomy Id: 35525
Other names: D. magna
Server load: low (22%) [HD]