EOG090X06TU protein (Daphnia magna) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

EOG090X06TU

Zinc finger protein ZPR1. (453 aa)

Predicted Functional Partners:

APZ42_013624

0.763

APZ42_027562

0.763

APZ42_015879

0.682

ef1a1

0.682

APZ42_026499

0.665

EOG090X0DNU

0.618

APZ42_032660

0.585

APZ42_024151

0.585

APZ42_020224

0.560

APZ42_023254

0.493

Your Current Organism:

Daphnia magna

NCBI taxonomy Id: 35525
Other names: D. magna

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APZ42_013624	APZ42_020224	A0A0P5SYQ0	A0A0P5BAM3	Nucleolar complex protein 2.	Ribosome production factor 2.	0.998
APZ42_013624	APZ42_026499	A0A0P5SYQ0	A0A0P5XCZ6	Nucleolar complex protein 2.	WD repeat-containing protein 3 variant.	0.952
APZ42_013624	APZ42_027562	A0A0P5SYQ0	A0A164R8R6	Nucleolar complex protein 2.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.934
APZ42_013624	EOG090X06TU	A0A0P5SYQ0	A0A0P5ZBZ2	Nucleolar complex protein 2.	Zinc finger protein ZPR1.	0.763
APZ42_013624	EOG090X0DNU	A0A0P5SYQ0	A0A162SM02	Nucleolar complex protein 2.	60S ribosomal protein L9.	0.939
APZ42_015879	EOG090X06TU	A0A0P5AUA9	A0A0P5ZBZ2	Elongation factor 1-alpha; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.	Zinc finger protein ZPR1.	0.682
APZ42_015879	EOG090X0DNU	A0A0P5AUA9	A0A162SM02	Elongation factor 1-alpha; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.	60S ribosomal protein L9.	0.811
APZ42_020224	APZ42_013624	A0A0P5BAM3	A0A0P5SYQ0	Ribosome production factor 2.	Nucleolar complex protein 2.	0.998
APZ42_020224	APZ42_024151	A0A0P5BAM3	A0A0P5ZAW4	Ribosome production factor 2.	DnaJ subfamily C member 2.	0.675
APZ42_020224	APZ42_026499	A0A0P5BAM3	A0A0P5XCZ6	Ribosome production factor 2.	WD repeat-containing protein 3 variant.	0.934
APZ42_020224	APZ42_027562	A0A0P5BAM3	A0A164R8R6	Ribosome production factor 2.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.945
APZ42_020224	EOG090X06TU	A0A0P5BAM3	A0A0P5ZBZ2	Ribosome production factor 2.	Zinc finger protein ZPR1.	0.560
APZ42_020224	EOG090X0DNU	A0A0P5BAM3	A0A162SM02	Ribosome production factor 2.	60S ribosomal protein L9.	0.660
APZ42_023254	EOG090X06TU	A0A164V3K9	A0A0P5ZBZ2	YjeF N-terminal domain-containing protein.	Zinc finger protein ZPR1.	0.493
APZ42_024151	APZ42_020224	A0A0P5ZAW4	A0A0P5BAM3	DnaJ subfamily C member 2.	Ribosome production factor 2.	0.675
APZ42_024151	APZ42_027562	A0A0P5ZAW4	A0A164R8R6	DnaJ subfamily C member 2.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.441
APZ42_024151	EOG090X06TU	A0A0P5ZAW4	A0A0P5ZBZ2	DnaJ subfamily C member 2.	Zinc finger protein ZPR1.	0.585
APZ42_026499	APZ42_013624	A0A0P5XCZ6	A0A0P5SYQ0	WD repeat-containing protein 3 variant.	Nucleolar complex protein 2.	0.952
APZ42_026499	APZ42_020224	A0A0P5XCZ6	A0A0P5BAM3	WD repeat-containing protein 3 variant.	Ribosome production factor 2.	0.934
APZ42_026499	APZ42_027562	A0A0P5XCZ6	A0A164R8R6	WD repeat-containing protein 3 variant.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.958