STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APZ42_024686Endo-beta-1,4-mannanase; Belongs to the glycosyl hydrolase 5 (cellulase A) family. (381 aa)    
Predicted Functional Partners:
APZ42_022469
39S ribosomal protein L23, mitochondrial.
   
 
 0.607
EOG090X0F2L
39S ribosomal protein L19, mitochondrial.
   
 
 0.580
APZ42_019457
39S ribosomal protein L46, mitochondrial.
   
   0.575
APZ42_014760
Mitochondrial ribosomal protein L3.
   
   0.575
APZ42_019899
39S ribosomal protein L4, mitochondrial.
   
   0.559
APZ42_024073
39S ribosomal protein L15, mitochondrial.
   
   0.551
EOG090X0DE4
39S ribosomal protein L16, mitochondrial.
   
   0.551
APZ42_033990
28S ribosomal protein S15, mitochondrial; Belongs to the universal ribosomal protein uS15 family.
   
   0.550
APZ42_002010
39S ribosomal protein L47.
    
 
 0.545
APZ42_011356
39S ribosomal protein L13, mitochondrial.
   
   0.542
Your Current Organism:
Daphnia magna
NCBI taxonomy Id: 35525
Other names: D. magna
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.