STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APZ42_023273Uncharacterized protein. (609 aa)    
Predicted Functional Partners:
APZ42_029427
Transcription elongation factor SPT5.
   
 0.781
APZ42_017655
DNA-directed RNA polymerases I, II, and III subunit RPABC2.
    
 0.772
EOG090X0PCK
DNA-directed RNA polymerases I, II, and III subunit RPABC5.
    
 0.772
APZ42_012093
DNA-directed RNA polymerase II subunit RPB3.
    
 0.772
APZ42_022464
DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.
    
 0.772
EOG090X0J86
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.
    
 0.772
APZ42_028255
DNA-directed RNA polymerases I.
    
 0.772
APZ42_026494
DNA-directed RNA polymerases I, II, and III subunit RPABC4.
    
 0.772
EOG090X0NWO
Transcription elongation factor SPT4; Component of the DRB sensitivity-inducing factor complex (DSIF complex), which regulates transcription elongation by RNA polymerase II; Belongs to the SPT4 family.
    
 0.760
APZ42_010900
RNA polymerase II subunit A C-terminal domain phosphatase; This promotes the activity of RNA polymerase II.
    
 0.740
Your Current Organism:
Daphnia magna
NCBI taxonomy Id: 35525
Other names: D. magna
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