SOVF_183980 protein (Spinacia oleracea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SOVF_183980

Uncharacterized protein. (285 aa)

Predicted Functional Partners:

SOVF_197200

0.547

SOVF_104080

0.484

SOVF_003710

0.484

SOVF_159820

0.478

SOVF_053010

0.455

SOVF_153150

0.440

Your Current Organism:

Spinacia oleracea

NCBI taxonomy Id: 3562
Other names: S. oleracea, Spinacea oleracea, Spinacia oleracea L., spinach

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SOVF_003710	SOVF_153150	A0A0K9S3T1	A0A0K9QQE2	Uncharacterized protein; Belongs to the cytochrome P450 family.	Uncharacterized protein.	0.455
SOVF_003710	SOVF_183980	A0A0K9S3T1	A0A0K9QHT3	Uncharacterized protein; Belongs to the cytochrome P450 family.	Uncharacterized protein.	0.484
SOVF_053010	SOVF_159820	A0A0K9RLK2	A0A0K9QPY8	TsaA-like domain-containing protein.	Xpo1 domain-containing protein.	0.455
SOVF_053010	SOVF_183980	A0A0K9RLK2	A0A0K9QHT3	TsaA-like domain-containing protein.	Uncharacterized protein.	0.455
SOVF_104080	SOVF_153150	A0A0K9R5I9	A0A0K9QQE2	KxDL domain-containing protein.	Uncharacterized protein.	0.455
SOVF_104080	SOVF_183980	A0A0K9R5I9	A0A0K9QHT3	KxDL domain-containing protein.	Uncharacterized protein.	0.484
SOVF_153150	SOVF_003710	A0A0K9QQE2	A0A0K9S3T1	Uncharacterized protein.	Uncharacterized protein; Belongs to the cytochrome P450 family.	0.455
SOVF_153150	SOVF_104080	A0A0K9QQE2	A0A0K9R5I9	Uncharacterized protein.	KxDL domain-containing protein.	0.455
SOVF_153150	SOVF_183980	A0A0K9QQE2	A0A0K9QHT3	Uncharacterized protein.	Uncharacterized protein.	0.440
SOVF_159820	SOVF_053010	A0A0K9QPY8	A0A0K9RLK2	Xpo1 domain-containing protein.	TsaA-like domain-containing protein.	0.455
SOVF_159820	SOVF_183980	A0A0K9QPY8	A0A0K9QHT3	Xpo1 domain-containing protein.	Uncharacterized protein.	0.478
SOVF_183980	SOVF_003710	A0A0K9QHT3	A0A0K9S3T1	Uncharacterized protein.	Uncharacterized protein; Belongs to the cytochrome P450 family.	0.484
SOVF_183980	SOVF_053010	A0A0K9QHT3	A0A0K9RLK2	Uncharacterized protein.	TsaA-like domain-containing protein.	0.455
SOVF_183980	SOVF_104080	A0A0K9QHT3	A0A0K9R5I9	Uncharacterized protein.	KxDL domain-containing protein.	0.484
SOVF_183980	SOVF_153150	A0A0K9QHT3	A0A0K9QQE2	Uncharacterized protein.	Uncharacterized protein.	0.440
SOVF_183980	SOVF_159820	A0A0K9QHT3	A0A0K9QPY8	Uncharacterized protein.	Xpo1 domain-containing protein.	0.478
SOVF_183980	SOVF_197200	A0A0K9QHT3	A0A0K9QDF1	Uncharacterized protein.	RF_PROK_I domain-containing protein.	0.547
SOVF_197200	SOVF_183980	A0A0K9QDF1	A0A0K9QHT3	RF_PROK_I domain-containing protein.	Uncharacterized protein.	0.547