STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SOVF_179250TFIIS central domain-containing protein. (1049 aa)    
Predicted Functional Partners:
SOVF_134510
Sister chromatid cohesion protein.
   
  
 0.705
SOVF_042120
RPOLD domain-containing protein.
    
  0.704
SOVF_165990
RNA_pol_L_2 domain-containing protein.
    
 0.662
SOVF_138370
Uncharacterized protein.
    
  0.661
SOVF_100230
RPOL4c domain-containing protein.
    
  0.661
SOVF_026860
Uncharacterized protein.
    
  0.661
SOVF_067330
TFIIS-type domain-containing protein.
    
 0.631
SOVF_067320
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.
    
 0.631
SOVF_097120
HECT domain-containing protein.
   
    0.628
SOVF_023000
HECT domain-containing protein.
   
    0.628
Your Current Organism:
Spinacia oleracea
NCBI taxonomy Id: 3562
Other names: S. oleracea, Spinacea oleracea, Spinacia oleracea L., spinach
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