STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SOVF_162690CCHC-type domain-containing protein. (260 aa)    
Predicted Functional Partners:
SOVF_118610
CCHC-type domain-containing protein.
  
     0.517
SOVF_215710
Uncharacterized protein.
  
     0.512
SOVF_198250
Uncharacterized protein.
  
     0.512
SOVF_207560
Integrase catalytic domain-containing protein.
  
     0.504
SOVF_206380
Reverse transcriptase Ty1/copia-type domain-containing protein.
  
     0.504
SOVF_116290
Reverse transcriptase Ty1/copia-type domain-containing protein.
  
     0.502
SOVF_192950
Uncharacterized protein.
  
     0.497
SOVF_037600
CCHC-type domain-containing protein.
  
     0.497
SOVF_157600
Reverse transcriptase Ty1/copia-type domain-containing protein.
  
     0.494
SOVF_192000
Uncharacterized protein.
  
     0.492
Your Current Organism:
Spinacia oleracea
NCBI taxonomy Id: 3562
Other names: S. oleracea, Spinacea oleracea, Spinacia oleracea L., spinach
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.