STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDX23120.1TRAP transporter, DctM subunit. (435 aa)    
Predicted Functional Partners:
SDX23146.1
TRAP-type C4-dicarboxylate transport system, small permease component.
 
  0.906
SDW08328.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
  
    0.781
SDX33591.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
  
    0.757
SDX33378.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
  
    0.753
SDX23176.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
 
    0.750
SDX33628.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
  
    0.747
SDW06405.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
  
    0.742
SDX33701.1
TRAP-type C4-dicarboxylate transport system, small permease component.
  
  0.736
SDX28468.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
  
    0.730
SDX33291.1
TRAP-type C4-dicarboxylate transport system, small permease component.
  
  0.730
Your Current Organism:
Albimonas donghaensis
NCBI taxonomy Id: 356660
Other names: A. donghaensis, Albimonas donghaensis Lim et al. 2008, DSM 17890, KCTC 12586, Paracoccus sp. DS2, strain DS2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.