STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRO04040.1CRISPR-associated protein Cas1. (295 aa)    
Predicted Functional Partners:
KRO04039.1
Hypothetical protein.
 
   
 0.896
KRO04460.1
Hypothetical protein.
 
     0.834
KRO05419.1
Hypothetical protein.
 
   
 0.820
KRO06641.1
Nucleoid DNA-binding protein; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions.
    
   0.696
KRO05323.1
Oxidoreductase domain-containing protein.
   
 
 0.504
KRO04677.1
Dehydrogenase related protein.
   
 
 0.504
KRO06195.1
Hypothetical protein.
  
     0.423
KRO07206.1
Transcription regulator.
    
   0.418
KRO07321.1
Hypothetical protein.
    
   0.418
Your Current Organism:
Lactobacillus parabrevis
NCBI taxonomy Id: 357278
Other names: ATCC 53295, L. parabrevis, LMG 11984, LMG:11984, Lactobacillus parabrevis Vancanneyt et al. 2006
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.