STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ping_0302Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: shm:Shewmr7_3944 transcriptional regulator, XRE family. (518 aa)    
Predicted Functional Partners:
Ping_0764
PFAM: lipopolysaccharide biosynthesis; KEGG: son:SO3191 chain length determinant protein.
  
     0.686
Ping_0883
PFAM: HipA domain protein; KEGG: vch:VC0815 hypothetical protein.
 
 
 0.580
glcB
Malate synthase; Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl- CoA) and glyoxylate to form malate and CoA; Belongs to the malate synthase family. GlcB subfamily.
       0.558
Ping_2637
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: ppr:PBPRB0483 hypothetical protein.
  
     0.537
Ping_3049
KEGG: sru:SRU_0809 hypothetical protein.
  
     0.505
Ping_0304
PFAM: isocitrate lyase and phosphorylmutase; KEGG: nar:Saro_1029 isocitrate lyase and phosphorylmutase.
 
     0.496
Ping_0002
Transposase-like protein; KEGG: vvy:VV3211 transposase and inactivated derivative.
  
     0.491
Ping_1345
Transposase-like protein; KEGG: vvy:VV3211 transposase and inactivated derivative.
  
     0.491
Ping_1360
Transposase-like protein; KEGG: vvy:VV3211 transposase and inactivated derivative.
  
     0.491
Ping_2699
Transposase-like protein; KEGG: vvy:VV3211 transposase and inactivated derivative.
  
     0.491
Your Current Organism:
Psychromonas ingrahamii
NCBI taxonomy Id: 357804
Other names: P. ingrahamii 37, Psychromonas ingrahamii 37, Psychromonas ingrahamii str. 37, Psychromonas ingrahamii strain 37, gas vacuolate str. 37
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.