STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Ping_1494Delta-9 acyl-phospholipid desaturase; PFAM: fatty acid desaturase; KEGG: ppr:PBPRB0742 hypothetical putative delta-9 fatty acid desaturase. (372 aa)    
Predicted Functional Partners:
Ping_1493
PFAM: regulatory protein, TetR; KEGG: cps:CPS_0335 transcriptional regulator, TetR family.
 
   
 0.802
Ping_2438
TIGRFAM: cysteine synthases; cysteine synthase A; PFAM: Pyridoxal-5'-phosphate-dependent enzyme, beta subunit; KEGG: sdn:Sden_2520 cysteine synthase A; Belongs to the cysteine synthase/cystathionine beta- synthase family.
   
   0.556
ddl
D-alanine--D-alanine ligase; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family.
      
 0.542
glcB
Malate synthase; Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl- CoA) and glyoxylate to form malate and CoA; Belongs to the malate synthase family. GlcB subfamily.
      
 0.542
ddl-2
D-alanine--D-alanine ligase; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family.
      
 0.542
pfaC
Polyunsaturated fatty acid synthase PfaC; PFAM: beta-ketoacyl synthase; Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ; KEGG: cps:CPS_3102 polyunsaturated fatty acid synthase PfaC; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
   
 
 0.519
ftsN
Cell division protein FtsN; PFAM: Sporulation domain protein; KEGG: pat:Patl_4190 sporulation related.
  
     0.507
Ping_3433
KEGG: pha:PSHAa0505 hypothetical protein.
  
     0.470
Ping_0888
PFAM: Rhomboid family protein; KEGG: cps:CPS_2148 membrane protein, Rhomboid family.
  
     0.468
Ping_0208
KEGG: pha:PSHAa2750 hypothetical protein.
  
     0.445
Your Current Organism:
Psychromonas ingrahamii
NCBI taxonomy Id: 357804
Other names: P. ingrahamii 37, Psychromonas ingrahamii 37, Psychromonas ingrahamii str. 37, Psychromonas ingrahamii strain 37, gas vacuolate str. 37
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