STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABQ89048.1ABC-type branched-chain amino acid transport systems periplasmic component-like protein. (410 aa)    
Predicted Functional Partners:
ABQ89047.1
PFAM: inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.997
ABQ89046.1
PFAM: inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.996
ABQ91339.1
PFAM: Extracellular ligand-binding receptor.
  
  
  0.963
ABQ92448.1
PFAM: Extracellular ligand-binding receptor.
  
  
  0.961
ABQ89044.1
PFAM: ABC transporter related; SMART: AAA ATPase.
 
  
 0.953
ABQ89049.1
PFAM: ABC transporter related; SMART: AAA ATPase.
 
  
 0.938
ABQ89936.1
PFAM: Extracellular ligand-binding receptor.
  
  
 
0.925
ABQ89045.1
PFAM: AMP-dependent synthetase and ligase.
 
    0.897
ABQ91341.1
PFAM: inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.867
ABQ89050.1
Coenzyme F390 synthetase-like protein.
 
    0.861
Your Current Organism:
Roseiflexus sp. RS1
NCBI taxonomy Id: 357808
Other names: R. sp. RS-1, Roseiflexus sp. RS-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.