STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_0345Hypothetical protein; KEGG: bsu:BG10173 unknown. (168 aa)    
Predicted Functional Partners:
Cphy_0346
PFAM: protein of unknown function UPF0079; KEGG: cth:Cthe_1776 protein of unknown function UPF0079.
       0.810
Cphy_3743
KEGG: amt:Amet_0345 hypothetical protein.
  
     0.717
Cphy_0744
KEGG: csc:Csac_0633 ATP-dependent endonuclease of the OLD family-like protein.
  
     0.702
Cphy_2436
Sodium pump decarboxylase gamma subunit; Catalyzes the decarboxylation of oxaloacetate coupled to Na(+) translocation; Belongs to the OadG family.
  
     0.698
Cphy_0177
PFAM: protein of unknown function UPF0153; KEGG: cte:CT0872 hypothetical protein.
  
     0.653
Cphy_0347
PFAM: peptidase M22 glycoprotease; KEGG: cth:Cthe_1775 peptidase M22, glycoprotease.
       0.631
Cphy_0348
Ribosomal-protein-alanine acetyltransferase; Acetylates the N-terminal alanine of ribosomal protein S18.
       0.610
Cphy_3744
KEGG: sat:SYN_00586 hypothetical membrane protein.
  
     0.605
Cphy_2363
Hypothetical protein; KEGG: tte:TTE1601 membrane-fusion protein.
  
     0.574
Cphy_2478
PFAM: Septum formation initiator.
  
     0.548
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.