STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_0583KEGG: ret:RHE_PE00289 probable sugar ABC transporter, substrate-binding protein. (367 aa)    
Predicted Functional Partners:
Cphy_0582
Monosaccharide-transporting ATPase; PFAM: inner-membrane translocator; KEGG: ent:Ent638_4073 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 0.988
Cphy_0581
Monosaccharide-transporting ATPase; PFAM: inner-membrane translocator; KEGG: sme:SMc03000 putative permease ABC transporter protein; Belongs to the binding-protein-dependent transport system permease family.
 0.979
Cphy_0580
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tte:TTE0763 ABC-type sugar (aldose) transport system, ATPase component.
 
 0.964
Cphy_2838
Multi-sensor hybrid histidine kinase; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; Hpt domain protein; KEGG: pth:PTH_0142 hypothetical protein.
  
 
 0.859
Cphy_0584
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
 
  
 0.748
Cphy_2011
Monosaccharide-transporting ATPase; PFAM: inner-membrane translocator; KEGG: vei:Veis_1087 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
 0.727
Cphy_2012
KEGG: bch:Bcen2424_5037 periplasmic binding protein/LacI transcriptional regulator.
  
     0.690
Cphy_3278
Monosaccharide-transporting ATPase; PFAM: inner-membrane translocator; KEGG: cno:NT01CX_0163 ribose ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
 0.660
Cphy_1133
Monosaccharide-transporting ATPase; PFAM: inner-membrane translocator; KEGG: ctc:CTC00906 ribose transport system permease protein rbsC.
 
 0.646
rhaM
L-rhamnose 1-epimerase; Involved in the anomeric conversion of L-rhamnose.
 
    0.607
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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