STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_0955PFAM: Xylose isomerase domain protein TIM barrel; KEGG: fnu:FN1967 hypothetical protein. (320 aa)    
Predicted Functional Partners:
Cphy_1506
PFAM: NUDIX hydrolase; KEGG: mma:MM_2810 hypothetical protein.
  
     0.477
Cphy_2859
PFAM: helix-turn-helix domain protein; KEGG: btk:BT9727_1061 probable transcriptional regulator.
  
     0.466
Cphy_0917
KEGG: cbh:CLC_1692 hypothetical protein.
  
     0.454
Cphy_0927
KEGG: cbh:CLC_1692 hypothetical protein.
  
     0.454
Cphy_0954
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: spb:M28_Spy1636 transcriptional regulator, Cro/CI family.
  
    0.439
Cphy_0388
PFAM: oxidoreductase domain protein; KEGG: bth:BT_3586 putative dehydrogenase.
  
  
 0.436
Cphy_0398
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: bca:BCE_1902 oxidoreductase family protein.
  
  
 0.436
Cphy_0466
PFAM: oxidoreductase domain protein; KEGG: rca:Rcas_4405 oxidoreductase domain protein.
  
  
 0.436
Cphy_0599
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: bcl:ABC0605 oxidoreductase.
  
  
 0.436
Cphy_0600
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: bcl:ABC3277 dehydrogenase.
  
  
 0.436
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
Server load: low (34%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.