STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_1114PFAM: NADPH-dependent FMN reductase; KEGG: dsy:DSY1214 hypothetical protein. (184 aa)    
Predicted Functional Partners:
cobQ
Cobyric acid synthase CobQ; Catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation. Belongs to the CobB/CobQ family. CobQ subfamily.
       0.714
Cphy_1113
PFAM: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; KEGG: cbe:Cbei_1263 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP.
       0.714
Cphy_1111
PFAM: aminotransferase class I and II; KEGG: cpe:CPE1040 probable Thr-phospho decarboxylase.
       0.668
Cphy_1656
PFAM: DSBA oxidoreductase; KEGG: efa:EF1088 hypothetical protein.
 
    0.565
Cphy_2416
PFAM: Extradiol ring-cleavage dioxygenase class III protein subunit B; KEGG: cac:CAC0851 ortholog YgiD E.coli.
 
  
 0.434
Cphy_1152
PFAM: NMT1/THI5 like domain protein; KEGG: dsy:DSY4446 hypothetical protein.
  
  
 0.426
Cphy_1347
PFAM: NMT1/THI5 like domain protein; KEGG: cth:Cthe_2575 hypothetical protein.
  
  
 0.426
Cphy_3870
KEGG: dsy:DSY1488 hypothetical protein.
  
  
 0.426
Cphy_0996
PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: ssp:SSP1638 putative lipase.
 
     0.422
cobD
Cobalamin biosynthesis protein CobD; Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group.
       0.415
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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