STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_1189PFAM: peptidase domain protein. (365 aa)    
Predicted Functional Partners:
Cphy_1190
KEGG: dsy:DSY0345 hypothetical protein.
       0.500
Cphy_0739
TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: dsy:DSY2429 hypothetical protein; Belongs to the thioredoxin family.
    
   0.481
Cphy_2226
KEGG: tte:TTE1718 thiol-disulfide isomerase and thioredoxins.
    
   0.481
Cphy_3285
Hypothetical protein.
    
   0.481
Cphy_3919
TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: sat:SYN_00045 thioredoxin; Belongs to the thioredoxin family.
    
   0.481
Cphy_1215
KEGG: amt:Amet_1520 hypothetical protein.
   
  
 0.447
Cphy_0040
PFAM: Forkhead-associated protein; KEGG: cth:Cthe_1334 FHA domain containing protein.
  
  
 0.427
Cphy_0217
Hypothetical protein.
  
  
 0.427
Cphy_0287
PFAM: GCN5-related N-acetyltransferase; KEGG: lsl:LSL_0634 phosphinothricin N-acetyltransferase.
   
    0.416
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.