STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_1306KEGG: cbf:CLI_0627 hypothetical protein. (306 aa)    
Predicted Functional Partners:
Cphy_0265
KEGG: sbl:Sbal_2840 hypothetical protein.
   
 0.851
Cphy_1305
KEGG: ssv:SSU98_0050 hypothetical protein.
       0.741
Cphy_3545
Glycosyltransferase; KEGG: lca:LSEI_1134 glycosyltransferase.
 
 
 
 0.661
Cphy_2336
PFAM: glycosyl transferase group 1; CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase; KEGG: ecc:c3694 hypothetical protein.
   
 
 0.617
Cphy_1204
PFAM: glycosyl transferase group 1; KEGG: cth:Cthe_1357 glycosyl transferase, group 1.
   
 
 0.615
Cphy_1206
PFAM: glycosyl transferase group 1; KEGG: cth:Cthe_1357 glycosyl transferase, group 1.
   
 
 0.615
Cphy_2811
PFAM: glycosyl transferase group 1; TPR repeat-containing protein; KEGG: dsy:DSY4437 hypothetical protein.
   
 
 0.615
Cphy_2813
PFAM: glycosyl transferase group 1; KEGG: bxe:Bxe_C1281 putative glycosyl transferase.
   
 
 0.615
Cphy_3501
PFAM: glycosyl transferase group 1; KEGG: eba:ebA5884 hypothetical protein.
   
 
 0.615
Cphy_3505
PFAM: glycosyl transferase group 1; KEGG: pdi:BDI_0575 glycosyltransferase family 4.
   
 
 0.615
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.